Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs13429806 chr2:100070490 C/A 3.57E-6 514 22.42 20.1 7.17 KM Plot
HNSC rs13430962 chr2:100096371 C/T 1.5E-5 515 9.77 20.1 22.42 KM Plot
HNSC rs13432046 chr2:100067456 A/G 2.94E-6 515 22.42 20.15 7.17 KM Plot
HNSC rs138030683 chr1:36353261 C/CT 2.89E-11 511 21.33 30.92 3.73 KM Plot
HNSC rs1382426 chr3:161045933 G/A 4.26E-5 511 24.63 24.12 17.75 KM Plot
HNSC rs139455718 chr17:18277417 AAGG/A 7.79E-6 510 21.93 20.53 9.78 KM Plot
HNSC rs139499925 chr2:100023858 C/CA 3.04E-8 515 22.5 20.15 7 KM Plot
HNSC rs140792263 chr12:122362291 G/C 4.93E-5 506 21.65 24.23 14.13 KM Plot
HNSC rs142324044 chr1:36433070 C/T 2.35E-11 511 21.33 30.92 3.73 KM Plot
HNSC rs142370407 chr1:36430202 C/G 2.35E-11 511 21.33 30.92 3.73 KM Plot
HNSC rs142589181 chr1:36254332 G/C 9.73E-14 512 21.3 27.43 3.02 KM Plot
HNSC rs142655022 chr1:36293891 G/A 6.81E-14 510 21.23 32.67 3.02 KM Plot
HNSC rs142671680 chr2:100064771 A/AT 2.94E-6 515 22.42 20.15 7.17 KM Plot
HNSC rs142952810 chr21:47959976 G/GCTGTGC 3.6E-8 513 21.33 22.78 2.87 KM Plot
HNSC rs143102238 chr15:31139516 AGAAAT/A 1.11E-5 504 22.83 20.53 12.07 KM Plot